David Bioinfo !new! -

Sometimes, I’m a plumber (unclogging data pipelines). Sometimes, a detective (finding a single SNP in 3 billion base pairs). And once a month, I’m a philosopher (arguing whether a p-value of 0.051 is really non-significant).

The first rule of : Always check your checksums. david bioinfo

Welcome to bioinformatics. It’s not just running BLAST on a Sunday afternoon. Sometimes, I’m a plumber (unclogging data pipelines)

bwa mem genome.fa sample_R1.fastq sample_R2.fastq > aligned.sam samtools sort -@8 aligned.sam -o sorted.bam freebayes -f genome.fa sorted.bam > variants.vcf Then I wait. This is when I practice patience. And refresh my email 47 times. david bioinfo